PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G189800.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 374aa    MW: 40555.2 Da    PI: 7.728
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G189800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.84.9e-13110154347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +WT+eE+ l++ + ++lG+g+W+ Iar +   Rt+ q+ s+ qk+
  Potri.001G189800.1 110 PWTEEEHRLFLIGLQKLGKGDWRGIARNFVVSRTPTQVASHAQKF 154
                         8******************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.306103159IPR017930Myb domain
SuperFamilySSF466891.72E-16105160IPR009057Homeodomain-like
TIGRFAMsTIGR015573.3E-18106158IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.2E-11107150IPR009057Homeodomain-like
SMARTSM007178.2E-10107157IPR001005SANT/Myb domain
PfamPF002494.7E-10110153IPR001005SANT/Myb domain
CDDcd001671.26E-8110155No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MTRRCSHCSN NGHNSRTCPT RSSLASSSSS PLSGVKLFGV RLTDGSIIKK SASMGNLSAH  60
YHSSSSAAAS PNPDSPVSDR VHDDGYLSDD PAAHASCSTS RRGDRKKGVP WTEEEHRLFL  120
IGLQKLGKGD WRGIARNFVV SRTPTQVASH AQKFFIRQSN ATRRKRRSSL FDMVPEMATD  180
PQPVPEEQEL PSSQAGDDDN VDALPSLNLS LKPEFEPMDT ESQELVKERD KTVMGFSEFK  240
PSVPSSSEFV PIVSGSNEFT AVPGFFPAYM PVPYPYWAPN TTPFEEGKGA ATSHHEVLKP  300
VPSILKEPFN VDELVGMSHL SLGEIERRHR EPSPLSLKLI GEAPRQSAFH ASAPASGSDL  360
SNGKASGTKR LNS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.61930.0bud
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1482410.0EF148241.1 Populus trichocarpa x Populus deltoides clone WS01312_B18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002298242.10.0myb family transcription factor family protein
TrEMBLA9PIL70.0A9PIL7_9R
STRINGPOPTR_0001s19070.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77193346
Representative plantOGRP3941699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16350.11e-102MYB_related family protein